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Subtle pH differences trigger single residue motions for moderating conformations of calmodulin
intracellular pH sensing conformational change energy landscape perturbation response scanning molecular dynamics
2011/8/4
Abstract: This study reveals the essence of ligand recognition mechanisms by which calmodulin (CaM) controls a variety of Ca2+ signaling processes. We study eight forms of calcium-loaded CaM each with...
Predicting secondary structures, contact numbers, and residue-wise contact orders of native protein structures from amino acid sequences using critical random networks
protein structure prediction one-dimensional structure position-specific scoring matrix critical random network
2010/12/2
Predictions of one-dimensional protein structures such as secondary structures and contact numbers are useful for predicting three-dimensional structure and important for understanding the sequence-st...