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南京农业大学农学院《Bioinformatics》发表黄骥教授团队“PhasiHunter: a robust phased siRNA regulatory cascade mining tool based on multiple reference sequences”（图）
黄骥 发育 生物学过程
2024/6/11
2023年11月，生物信息学领域知名刊物 《Bioinformatics》 在线发表了题为“PhasiHunter: a robust phased siRNA regulatory cascade mining tool based on multiple reference sequences”的研究论文。
De novo phasing resolves haplotype sequences in complex plant genomes
de novo phasing haplotype-resolved assembly autopolyploid chromosomal rearrangement
2023/11/28
Genome phasing is a recently developed assembly method that separates heterozygous eukaryotic genomic regions and builds haplotype-resolved assemblies. Because differences between haplotypes are ignor...
Design and comparison of conventional and side-stream extractive distillation sequences for separating the methanol-toluene binary azeotrope with intermediate boiling entrainer
Side-stream extractive distillation Separation sequences Intermediate boiling entrainer Eco-efficiency analysis Methanol-toluene
2023/6/19
The side-stream extractive distillation (SSED) system is attracting widespread attention due to its high eco-efficiency. In the article, three double-column SSED (DC-SSED) sequences and two single-col...
New CRISPR-based tool inserts large DNA sequences at desired sites in cells（图）
CRISPR 新型工具 大DNA序列 PAST 基因工程
2023/6/21
Building on the CRISPR gene-editing system, MIT researchers have designed a new tool that can snip out faulty genes and replace them with new ones, in a safer and more efficient way.
About 70 percent of all human proteins include at least one sequence consisting of a single amino acid repeated many times, with a few other amino acids sprinkled in. These “low-complexity regions” ar...
Comprehensive review and assessment of computational methods for predicting RNA post-transcriptional modification sites from RNA sequences
N1-甲基腺苷 N6-甲基腺苷位点 计算方法
2024/5/17
对27种预测N1-甲基腺苷和N6-甲基腺苷位点的最先进方法的全面综述，涵盖了对开发成功预测器至关重要的各种重要方面，包括数据集质量、操作算法、序列和基因组特征、特征选择、模型性能评估和软件效用。同时提出了一种基于深度学习技术的计算方法DeepPromise，用于同时预测N1 -甲基腺苷和N6 -甲基腺苷。开发了一个web服务器，该服务器可以接受RNA序列和基因组序列，以预测两种假定的RNA修饰位点...
Duchenne muscular dystrophy (DMD), a rare genetic disease usually diagnosed in young boys, gradually weakens muscles across the body until the heart or lungs fail. Symptoms often show up by age 5; as ...
Linear Complexity of A Family of Binary pq2 -periodic Sequences From Euler Quotients
Cryptography linear complexity binary sequences
2019/6/21
We first introduce a family of binary pq2pq2 -periodic sequences based on the Euler quotients modulo pqpq, where pp and qq are two distinct odd primes and pp divides q−1q−1. The minimal po...
INTEGRATING DEPTH AND IMAGE SEQUENCES FOR PLANETARY ROVER MAPPING USING RGB-D SENSOR
RGB-D camera Depth Planetary Rover Mapping Bundle Adjustment Point Cloud
2018/5/15
RGB-D camera allows the capture of depth and color information at high data rates, and this makes it possible and beneficial integrate depth and image sequences for planetary rover mapping. The propos...
ROBUST FEATURE MATCHING IN TERRESTRIAL IMAGE SEQUENCES
Feature Detection Feature Matching SIFT SURF RANSAC 3D Reconstruction
2018/5/11
From the last decade, the feature detection, description and matching techniques are most commonly exploited in various photogrammetric and computer vision applications, which includes: 3D reconstruct...
Temporal preparation for speaking in question-answer sequences
turn-taking timing preparation
2017/9/1
In every-day conversations, the gap between turns of conversational partners is most frequently between 0 and 200 ms. We were interested how speakers achieve such fast transitions. We designed an expe...
Molecular characterization of snowdrop lectin (GNA) and its comparison with reported lectin sequences of Amaryllidaceae
bioinformatics biotic stress Galanthus nivalis gene cloning gene sequence insecticidal activity
2016/12/8
Plant lectins have become efficient sources of insect resistance in crops. The present study was conducted to identify, amplify, clone and characterize the plant lectin gene GNA. The lectin, present i...
Linear Complexity of Designs based on Coordinate Sequences of LRS and on Digital Sequences of Matrix/Skew LRS Coordinate Sequences over Galois Ring
matrix linear congruent generator skew linear recurrent sequence pseudo-random sequences
2016/12/8
Here we continue investigation of linear complexity properties of different ways to generate
pseudo-random sequences over Galois field wich essentially involves linear recurrences over
Galois ring a...
An Algorithm for Counting the Number of $2^n$-Periodic Binary Sequences with Fixed $k$-Error Linear Complexity
Sequence Linear Complexity k-Error Linear Complexity
2016/12/7
The linear complexity and kk-error linear complexity of sequences are important measures of the strength of key-streams generated by stream ciphers. The counting function of a sequence complexity meas...
RECOGNITION OF DRAINAGE TUNNELS DURING GLACIER LAKE OUTBURST EVENTS FROM TERRESTRIAL IMAGE SEQUENCES
Time-lapse image sequences glacier lake outburst floods feature tracking glacier movement
2016/11/30
In recent years, many glaciers all over the world have been distinctly retreating and thinning. One of the consequences of this is the increase of so called glacier lake outburst flood events (GLOFs)....