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McGenus: A Monte Carlo algorithm to predict RNA secondary structures with pseudoknots
McGenus Monte Carlo algorithm RNA secondary structures pseudoknots
2012/4/28
We present McGenus, an algorithm to predict RNA secondary structures with pseudoknots. The method is based on a classification of RNA structures according to their topological genus. McGenus can treat...
Efficient Monte Carlo Algorithm for Simulating Reversible Aggregation of Multisite Particles
Efficient Monte Carlo Algorithm Simulating Reversible Aggregation Multisite Particles
2010/11/15
We present an efficient and exact Monte Carlo algorithm to simulate reversible aggregation of particles with dedicated binding sites. This method introduces a novel data structure of dynamic bond tre...
A Monte Carlo Algorithm for Universally Optimal Bayesian Sequence Prediction and Planning
Bayesian Sequence Prediction computable physics
2010/4/1
The aim of this work is to address the question of whether we can in principle design rational decision-making agents or artificial intelligences embedded in computable physics such that their decisio...
An Efficient Monte Carlo Algorithm for a Restricted Class of Scattering Problems in Radiation Transfer
Monte Carlo Algorithm Scattering Problems Radiation Transfer
2009/6/9
An Efficient Monte Carlo Algorithm for a Restricted Class of Scattering Problems in Radiation Transfer。